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<datestamp>2015-02-14</datestamp>
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<publisher>HAL CCSD</publisher>
<title lang=en>Multiple geographic origins of commensalism and complex dispersal history of black rats</title>
<creator>Aplin, Ken P.</creator>
<creator>Suzuki, Hitoshi</creator>
<creator>Chinen, Alejandro A.</creator>
<creator>Chesser, R. Terry</creator>
<creator>Have, José Ten</creator>
<creator>Donnellan, Stephen C.</creator>
<creator>Austin, Jeremy</creator>
<creator>Frost, Angela</creator>
<creator>Gonzalez, Jean-Paul</creator>
<creator>Herbreteau, Vincent</creator>
<creator>Catzeflis, François</creator>
<creator>Soubrier, Julien</creator>
<creator>Fang, Yin-Ping</creator>
<creator>Robins, Judith</creator>
<creator>Matisoo-Smith, Elisabeth</creator>
<creator>Bastos, Amanda D.S.</creator>
<creator>Maryanto, Ibnu</creator>
<creator>Sinaga, Martua H.</creator>
<creator>Denys, Christiane</creator>
<creator>Van Den Bussche, Ronald A.</creator>
<creator>Conroy, Chris</creator>
<creator>Rowe, Kevin</creator>
<creator>Cooper, Alan</creator>
<contributor>Australian National Wildlife Collection ; CSIRO</contributor>
<contributor>Graduate School of Environmental Earth Science ; Hokkaido University</contributor>
<contributor>Smithsonian Institution ; National Museum of Natural History</contributor>
<contributor>Office of the Gene Technology Regulator (OGTR) ; Australian Government Department of Health</contributor>
<contributor>South Australian Museum, and Australian Centre for Evolutionary Biology and Biodiversity ; University of Adelaide</contributor>
<contributor>Australian Centre for Ancient DNA ; University of Adelaide</contributor>
<contributor>Conditions et territoires d'émergence des maladies : dynamiques spatio-temporelles de l'émergence, évolution, diffusion/réduction des maladies, résistance et prémunition des hôtes (CTEM) ; Institut de recherche pour le développement [IRD]</contributor>
<contributor>Espace pour le Développement (ESPACE-DEV) ; Université Montpellier 2 - Sciences et Techniques (UM2) - Université des Antilles et de la Guyane (UAG) - Institut de recherche pour le développement [IRD] - Université de la Réunion</contributor>
<contributor>Institut des Sciences de l'Evolution - Montpellier (ISEM) ; Université Montpellier 2 - Sciences et Techniques (UM2) - Institut de recherche pour le développement [IRD] - CNRS</contributor>
<contributor>National Chiayi University (NCYU) ; National Chiayi University</contributor>
<contributor>Department of Anthropology ; University of Auckland</contributor>
<contributor>Department of Anatomy & Structural Biology ; University of Otago</contributor>
<contributor>Mammal Research Institute, Department of Zoology & Entomology ; University of Pretoria</contributor>
<contributor>Indonesian Institute of Sciences (LIPI) & Museum Bogoriense ; Indonesian Institute of Sciences (LIPI) & Museum Bogoriense</contributor>
<contributor>Histoire naturelle de l’Homme préhistorique (HNHP) ; Université de Perpignan Via Domitia (UPVD) - CNRS - Muséum national d'histoire naturelle (MNHN)</contributor>
<contributor>Department of Zoology ; Oklahoma State University</contributor>
<contributor>Museum of Vertebrate Zoology ; University of California, Berkeley</contributor>
<description>International audience</description>
<source>PLoS ONE</source>
<publisher>Public Library of Science</publisher>
<identifier>ird-00714383</identifier>
<identifier>http://hal.ird.fr/ird-00714383</identifier>
<identifier>http://hal.ird.fr/ird-00714383/document</identifier>
<source>http://hal.ird.fr/ird-00714383</source>
<source>PLoS ONE, Public Library of Science, 2011, 6 (11), pp.e26357. <10.1371/journal.pone.0026357></source>
<identifier>DOI : 10.1371/journal.pone.0026357</identifier>
<identifier>IRD : fdi:010055548</identifier>
<language>en</language>
<subject>[SDV.EE.SANT] Life Sciences/Ecology, environment/Health</subject>
<type>Journal articles</type>
<description lang=en>The Black Rat (Rattus rattus) spread out of Asia to become one of the world's worst agricultural and urban pests, and a reservoir or vector of numerous zoonotic diseases, including the devastating plague. Despite the global scale and inestimable cost of their impacts on both human livelihoods and natural ecosystems, little is known of the global genetic diversity of Black Rats, the timing and directions of their historical dispersals, and the risks associated with contemporary movements. We surveyed mitochondrial DNA of Black Rats collected across their global range as a first step towards obtaining an historical genetic perspective on this socioeconomically important group of rodents. We found a strong phylogeographic pattern with well-differentiated lineages of Black Rats native to South Asia, the Himalayan region, southern Indochina, and northern Indochina to East Asia, and a diversification that probably commenced in the early Middle Pleistocene. We also identified two other currently recognised species of Rattus as potential derivatives of a paraphyletic R.rattus. Three of the four phylogenetic lineage units within R. rattus show clear genetic signatures of major population expansion in prehistoric times, and the distribution of particular haplogroups mirrors archaeologically and historically documented patterns of human dispersal and trade. Commensalism clearly arose multiple times in R. Rattus and in widely separated geographic regions, and this may account for apparent regionalism in their associated pathogens. Our findings represent an important step towards deeper understanding the complex and influential relationship that has developed between Black Rats and humans, and invite a thorough re-examination of host-pathogen associations among Black Rats.</description>
<date>2011</date>
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