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<publisher>HAL CCSD</publisher>
<title lang=en>Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing</title>
<creator>Massana, Ramon</creator>
<creator>Gobet, Angélique</creator>
<creator>Audic, Stéphane</creator>
<creator>Bass, David</creator>
<creator>Bittner, Lucie</creator>
<creator>Boutte, Christophe</creator>
<creator>Chambouvet, Aurélie</creator>
<creator>Christen, Richard</creator>
<creator>Claverie, Jean-Michel</creator>
<creator>Decelle, Johan</creator>
<creator>Dolan, John R</creator>
<creator>Dunthorn, Micah</creator>
<creator>Edvardsen, Bente</creator>
<creator>Forn, Irene</creator>
<creator>Forster, Dominik</creator>
<creator>Guillou, Laure</creator>
<creator>Jaillon, Olivier</creator>
<creator>Kooistra, Wiebe H.C.F.</creator>
<creator>Logares, Ramiro</creator>
<creator>Mahé, Frédéric</creator>
<creator>Not, Fabrice</creator>
<creator>Ogata, Hiroyuki</creator>
<creator>Pawlowski, Jan</creator>
<creator>Pernice, Massimo C</creator>
<creator>Probert, Ian</creator>
<creator>Romac, Sarah</creator>
<creator>Richards, Thomas</creator>
<creator>Santini, Sébastien</creator>
<creator>Shalchian-Tabrizi, Kamran</creator>
<creator>Siano, Raffaele</creator>
<creator>Simon, Nathalie</creator>
<creator>Stoeck, Thorsten</creator>
<creator>Vaulot, Daniel</creator>
<creator>Zingone, Adriana</creator>
<creator>, </creator>
<contributor>Institute of Marine Sciences / Institut de Ciències del Mar [Barcelona] (ICM) ; Consejo Superior de Investigaciones Científicas [Spain] (CSIC)</contributor>
<contributor>Adaptation et diversité en milieu marin (ADMM) ; Université Pierre et Marie Curie - Paris 6 (UPMC) - Centre National de la Recherche Scientifique (CNRS)</contributor>
<contributor>Evolution des Protistes et Ecosystèmes Pélagiques (EPEP) ; Adaptation et diversité en milieu marin (ADMM) ; Université Pierre et Marie Curie - Paris 6 (UPMC) - Centre National de la Recherche Scientifique (CNRS) - Université Pierre et Marie Curie - Paris 6 (UPMC) - Centre National de la Recherche Scientifique (CNRS)</contributor>
<contributor>The Natural History Museum ; British Museum</contributor>
<contributor>University of Exeter</contributor>
<contributor>Evolution Paris Seine ; Université Nice Sophia Antipolis (UNS) ; Université Côte d'Azur (UCA) - Université Côte d'Azur (UCA) - Centre National de la Recherche Scientifique (CNRS) - Université des Antilles et de la Guyane (UAG) - Université Pierre et Marie Curie - Paris 6 (UPMC)</contributor>
<contributor>Information génomique et structurale (IGS) ; Aix Marseille Université (AMU) - Centre National de la Recherche Scientifique (CNRS)</contributor>
<contributor>Laboratoire d'océanographie de Villefranche (LOV) ; Université Pierre et Marie Curie - Paris 6 (UPMC) - Institut national des sciences de l'Univers (INSU - CNRS) - Centre National de la Recherche Scientifique (CNRS)</contributor>
<contributor>University of Kaiserslautern [Kaiserslautern]</contributor>
<contributor>University of Oslo (UiO)</contributor>
<contributor>Diversité et Interactions au sein du Plancton Océanique (DIPO) ; Adaptation et diversité en milieu marin (ADMM) ; Université Pierre et Marie Curie - Paris 6 (UPMC) - Centre National de la Recherche Scientifique (CNRS) - Université Pierre et Marie Curie - Paris 6 (UPMC) - Centre National de la Recherche Scientifique (CNRS)</contributor>
<contributor>CEA-Institut de génomique-genoscope</contributor>
<contributor>Stazione Zoologica Napoli</contributor>
<contributor>Kyoto University [Kyoto]</contributor>
<contributor>University of Geneva [Switzerland]</contributor>
<contributor>Dynamiques de l'Environnement Côtier (DYNECO) ; Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)</contributor>
<description>International audience</description>
<source>ISSN: 1462-2912</source>
<source>EISSN: 1462-2920</source>
<source>Environmental Microbiology</source>
<publisher>Wiley-Blackwell</publisher>
<identifier>hal-01191731</identifier>
<identifier>http://hal.upmc.fr/hal-01191731</identifier>
<identifier>http://hal.upmc.fr/hal-01191731/document</identifier>
<identifier>http://hal.upmc.fr/hal-01191731/file/Massana_2015_Marine_protist.pdf</identifier>
<source>http://hal.upmc.fr/hal-01191731</source>
<source>Environmental Microbiology, Wiley-Blackwell, 2015, 17 (10), pp.4035-4049. 〈10.1111/1462-2920.12955〉</source>
<identifier>DOI : 10.1111/1462-2920.12955</identifier>
<relation>info:eu-repo/semantics/altIdentifier/doi/10.1111/1462-2920.12955</relation>
<language>en</language>
<subject>[SDV.BID.SPT] Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy</subject>
<subject>[SDV.EE.ECO] Life Sciences [q-bio]/Ecology, environment/Ecosystems</subject>
<type>info:eu-repo/semantics/article</type>
<type>Journal articles</type>
<description lang=en>Although protists are critical components of marine ecosystems, they are still poorly characterized. Here we analysed the taxonomic diversity of planktonic and benthic protist communities collected in six distant European coastal sites. Environmental deoxyribonucleic acid (DNA) and ribonucleic acid (RNA) from three size fractions (pico-, nano- and micro/mesoplankton), as well as from dissolved DNA and surface sediments were used as templates for tag pyrosequencing of the V4 region of the 18S ribosomal DNA. Beta-diversity analyses split the protist community structure into three main clusters: picoplankton-nanoplankton-dissolved DNA, micro/mesoplankton and sediments. Within each cluster, protist communities from the same site and time clustered together, while communities from the same site but different seasons were unrelated. Both DNA and RNA-based surveys provided similar relative abundances for most class-level taxonomic groups. Yet, particular groups were overrepresented in one of the two templates, such as marine alveolates (MALV)-I and MALV-II that were much more abundant in DNA surveys. Overall, the groups displaying the highest relative contribution were Dinophyceae, Diatomea, Ciliophora and Acantharia. Also, well represented were Mamiellophyceae, Cryptomonadales, marine alveolates and marine stramenopiles in the picoplankton, and Monadofilosa and basal Fungi in sediments. Our extensive and systematic sequencing of geographically separated sites provides the most comprehensive molecular description of coastal marine protist diversity to date.</description>
<date>2015</date>
</dc>
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